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- OPEN ACCESS
- Rosa H. Escobar-Lux,
- David M. Fields,
- Howard I. Browman,
- Steven D. Shema,
- Reidun M. Bjelland,
- Ann-Lisbeth Agnalt,
- Anne Berit Skiftesvik,
- Ole B. Samuelsen, and
- Caroline M.F. Durif
Hydrogen peroxide (H2O2), a pesticide used in salmonid aquaculture, is released directly into the environment where nontarget organisms are at risk of exposure. We determined threshold concentrations for mortality of Calanus spp., the dominant zooplankton species in the North Atlantic, and assessed sublethal effects, focusing on the escape response and oxygen consumption rates (OCRs) as behavioral and physiological assays. One-hour exposure to 170 mg·L−1 (i.e., 10% of the recommended H2O2 treatment) was lethal to copepodite stage V (92% mortality) and adult females (100% mortality). The acute median lethal concentration (1h-LC50) was 214.1 (150.67–277.4) and 48.6 (44.9–52.2) mg·L−1 for copepodite V and adults, respectively. The 25-h LC50 was 77.1 (57.9–96.2) and 30.63 (25.4–35.8) mg·L−1 for copepodite V and adults, respectively. At concentrations of 0.5% and 1% of the recommended treatment level, Calanus spp. showed a decrease in escape performance and lower OCRs with increased concentration. At H2O2 concentrations of 5% of the recommended treatment levels (85 mg·L−1), exposed copepods showed no escape reaction response. These results suggest that sublethal concentrations of H2O2 will increase the risk of predation for Calanus spp. Furthermore, this study provides supporting evidence that theoretical “safe” values, traditionally used for predicting toxicity thresholds, underestimate the impact of H2O2 on the physiological condition of nontarget crustaceans. - OPEN ACCESS
- OPEN ACCESS
- Jennifer F. Provencher,
- Stephanie B. Borrelle,
- Alexander L. Bond,
- Jennifer L. Lavers,
- Jan A. van Franeker,
- Susanne Kühn,
- Sjúrður Hammer,
- Stephanie Avery-Gomm, and
- Mark L. Mallory
Marine plastic pollution is an environmental contaminant of significant concern. There is a lack of consistency in sample collection and processing that continues to impede meta-analyses and large-scale comparisons across time and space. This is true for most taxa, including seabirds, which are the most studied megafauna group with regards to plastic ingestion research. Consequently, it is difficult to evaluate the impacts and extent of plastic contamination in seabirds fully and accurately, and to make inferences about species for which we have little or no data. We provide a synthesized set of recommendations specific for seabirds and plastic ingestion studies that include best practices in relation to sample collection, processing, and reporting, as well as highlighting some “cross-cutting” methods. We include guidance for how carcasses, regurgitations, and pellets should be handled and treated to prevent cross-contamination, and a discussion of what size class of microplastics can be assessed in each sample type. Although we focus on marine bird samples, we also include standardized techniques to remove sediment and biological material that are generalizable to other taxa. Lastly, metrics and data presentation of ingested plastics are briefly reviewed in the context of seabird studies. - OPEN ACCESS
- Shakira S.E. Azan,
- Norman D. Yan,
- Martha P. Celis-Salgado,
- Shelley E. Arnott,
- James A. Rusak, and
- Peter Sutey
One possible solution to the recent decline of calcium (Ca) concentrations in Canadian Shield forests and lakes in eastern North America is the addition of Ca-rich wood ash to watersheds. We investigated the feasibility of using small, mainly residential sources of non-industrial wood ash (NIWA) for this purpose by quantifying concentrations of its major nutrients and metals, its toxicity to Daphnia in aqueous extracts, and estimating the amount of NIWA available in the District of Muskoka in central Ontario. Locally collected NIWA averaged 30% Ca, and also contained smaller but significant amounts of K, Mg, Na, and P. Of these, K was so soluble that it was toxic to Daphnia over 48 h in the concentrate and 10-fold dilution; however, sedimented ash was not toxic over 15 d. Most metal levels in NIWA were below targets permitting unrestricted land application. However, Cu and Zn were just above these targets, but well below those for conditional use. Muskoka residents generate about 235 000 kg of NIWA annually, not enough to treat all central Ontario areas affected; however, a NIWA recycling programme implemented across southern Ontario could generate enough ash to solve the Ca decline problem in Muskoka’s forests and lakes. - OPEN ACCESSWe examined the physical and geochemical effects of sediment on the uptake of polybrominated diphenyl ethers (PBDEs) into marine sediment feeders and their transfer to higher trophic fauna. Sediment PBDEs increased with % total organic carbon (%TOC), organic carbon (OC) flux and grain size (%fines). Tissue PBDE variance was best explained (R2 = 0.70) by sediment acid volatile sulfides (AVS), PBDEs, and organic lability and input, with the highest values near wastewater outfalls. Dry weight tissue/sediment PBDEs declined with increasing sediment PBDEs, resulting in tissue dilution (ratio <1) at >10 000 pg/g in harbours. Ratios also decreased with increasing %fines, resulting in regional differences. These patterns imply that high levels of fines and high sediment concentrations make PBDEs less bioavailable.Dry weight PBDEs increased >100× between background deposit feeders and predators (polychaetes, crabs, bottom fish, seal), but lipid normalized PBDEs barely increased (<1.3%), suggesting remarkably high uptake in low-lipid sediment feeders, and that PBDEs don’t accumulate at higher trophic levels, but lipid content does. Filter feeders had lower lipid-normalized PBDEs than deposit feeders, highlighting the importance of food resources in higher trophic fauna for bioaccumulation.The most profound congener change occurred with sediment uptake, with nona/deca-BDEs declining and tetra-hexa-BDEs increasing. Harbour sediment feeders had more deca-BDEs than other samples, suggesting PBDEs mostly pass unmodifed through them. Deca-BDEs persist patchily in all tissues, reflecting variable dependence on sediment/pelagic food.
- OPEN ACCESS
Age matters: Submersion period shapes community composition of lake biofilms under glyphosate stress
The phosphonate herbicide glyphosate, which is the active ingredient in the commercial formulation Roundup®, is currently the most globally used herbicide. In aquatic ecosystems, periphytic biofilms, or periphyton, are at the base of food webs and are often the first communities to be in direct contact with runoff. Microcosm experiments were conducted to assess the effects of a pulse exposure of glyphosate on community composition and chlorophyll a concentrations of lake biofilms at different colonization stages (2 months, 1 year, and 20 years). This is the first study that uses such contrasting submersion periods. Biofilms were exposed to either environmental levels of pure analytical grade glyphosate (6 μg/L, 65 μg/L, and 600 μg/L) or to corresponding phosphorus concentrations. Community composition was determined by deep sequencing of the 18S and 16S rRNA genes to target eukaryotes and cyanobacteria, respectively. The results showed that submersion period was the only significant contributor to community structure. However, at the taxon level, the potentially toxic genus Anabaena was found to increase in relative abundance. We also observed that glyphosate releases phosphorus into the surrounding water, but not in a bioavailable form. The results of this study indicate that environmental concentrations of glyphosate do not seem to impact the community composition or metabolism of lake biofilms under pulse event conditions. - OPEN ACCESSMercury (Hg) is a global pollutant emitted primarily as gaseous Hg0 that is deposited in aquatic and terrestrial ecosystems following its oxidation to HgII. From that point, microbes play a key role in determining Hg’s fate in the environment by participating in sequestration, oxidation, reduction, and methylation reactions. A wide diversity of chemotrophic and phototrophic microbes occupying oxic and anoxic habitats are known to participate directly in Hg cycling. Over the last few years, new findings have come to light that have greatly improved our mechanistic understanding of microbe-mediated Hg cycling pathways in the environment. In this review, we summarize recent advances in microbially mediated Hg cycling and take the opportunity to compare the relatively well-studied chemotrophic pathways to poorly understood phototrophic pathways. We present how the use of genomic and analytical tools can be used to understand Hg transformations and the physiological context of recently discovered cometabolic Hg transformations supported in anaerobes and phototrophs. Finally, we propose a conceptual framework that emphasizes the role that phototrophs play in environmental Hg redox cycling and the importance of better characterizing such pathways in the face of the environmental changes currently underway.
- OPEN ACCESS
- Julio Mercader,
- Tolutope Akeju,
- Melisa Brown,
- Mariam Bundala,
- Matthew J. Collins,
- Les Copeland,
- Alison Crowther,
- Peter Dunfield,
- Amanda Henry,
- Jamie Inwood,
- Makarius Itambu,
- Joong-Jae Kim,
- Steve Larter,
- Laura Longo,
- Thomas Oldenburg,
- Robert Patalano,
- Ramaswami Sammynaiken,
- María Soto,
- Robert Tyler, and
- Hermine Xhauflair
Ancient starch research illuminates aspects of human ecology and economic botany that drove human evolution and cultural complexity over time, with a special emphasis on past technology, diet, health, and adaptation to changing environments and socio-economic systems. However, lapses in prevailing starch research demonstrate the exaggerated expectations for the field that have been generated over the last few decades. This includes an absence of explanation for the millennial-scale survivability of a biochemically degradable polymer, and difficulties in establishing authenticity and taxonomic identification. This paper outlines new taphonomic and authenticity criteria to guide future work toward designing research programs that fully exploit the potential of ancient starch while considering growing demands from readers, editors, and reviewers that look for objective compositional identification of putatively ancient starch granules. - OPEN ACCESS
- Krishna K. Thakur,
- Raphaël Vanderstichel,
- Shaorong Li,
- Emilie Laurin,
- Strahan Tucker,
- Chrys Neville,
- Amy Tabata, and
- Kristina M. Miller
Infectious diseases are likely contributing to large-scale declines in chinook salmon stocks in the Pacific Northwest, but the specific agents and diseases involved, and the prevalences in migratory salmon, are mostly unknown. We applied a high-throughput microfluidics platform to screen for 45 infectious agents in 556 out-migrating juvenile chinook salmon, collected from freshwater (FW) and saltwater (SW) locations in the Cowichan River system on Vancouver Island, Canada, during 2014. Nineteen agents (5 bacterial, 2 viral, and 12 parasitic) were detected, with prevalences ranging from 0.2% to 57.6%. Co-infections between Candidatus Branchiomonas cysticola Toenshoff, Kvellestad, Mitchell, Steinum, Falk, Colquhoun & Horn, 2012, Paranucleospora theridion Nylund, Nylund, Watanabe, Arnesen & Kalrsbakk, 2010, and gill chlamydia, all associated with gill disease, were observed in SW samples. We detected agents known to cause large-scale mortalities in Pacific salmon (Ceratonova shasta (Noble, 1950), Parvicapsula minibicornis Kent, Whitaker & Dawe, 1977), and agents only recently reported in Pacific salmon in BC (Ca. B. cysticola, P. theridion, Facilispora margolisi Jones, Prosperi-Porta & Kim, 2012 and Parvicapsula pseudobranchicola Karlsbakk, Saether, Hostlund, Fjellsoy & Nylund, 2002). Wild and hatchery fish were most divergent in agent profiles in FW, with higher agent diversity in wild fish. Differences in prevalence largely dissipated once they converged in the marine environment, although hatchery fish may be infected by a greater diversity of agents sooner after ocean entry by virtue of their more rapid migration from nearshore to offshore environments. - OPEN ACCESS
- Emiliano Di Cicco,
- Hugh W. Ferguson,
- Karia H. Kaukinen,
- Angela D. Schulze,
- Shaorong Li,
- Amy Tabata,
- Oliver P. Günther,
- Gideon Mordecai,
- Curtis A. Suttle, and
- Kristina M. Miller
Piscine orthoreovirus Strain PRV-1 is the causative agent of heart and skeletal muscle inflammation (HSMI) in Atlantic salmon (Salmo salar Linnaeus, 1758). Given its high prevalence in net pen salmon, debate has arisen on whether PRV poses a risk to migratory salmon, especially in British Columbia (BC) where commercially important wild Pacific salmon are in decline. Various strains of PRV have been associated with diseases in Pacific salmon, including erythrocytic inclusion body syndrome (EIBS), HSMI-like disease, and jaundice/anemia in Japan, Norway, Chile and Canada. We examined the developmental pathway of HSMI and jaundice/anemia associated with PRV-1 in farmed Atlantic and chinook (Oncorhynchus tshawytscha (Walbaum, 1792)) salmon in BC, respectively. In situ hybridization localized PRV-1 within developing lesions in both diseases. The two diseases showed dissimilar pathological pathways, with inflammatory lesions in heart and skeletal muscle in Atlantic salmon and degenerative-necrotic lesions in kidney and liver in chinook salmon, plausibly explained by differences in PRV load tolerance in red blood cells. Viral genome sequencing revealed no consistent differences in PRV-1 variants intimately involved in the development of both diseases suggesting that migratory chinook salmon may be at more than a minimal risk of disease from exposure to the high levels of PRV occurring in salmon farms. - OPEN ACCESSNickel (Ni) leaching from oil sands petroleum coke can have toxicological effects on aquatic organisms. However, geochemical controls on Ni release, transport, and attenuation within coke deposits remains limited. We examined the geochemistry of fluid coke and associated pore waters from two deposits at an oil sands mine near Fort McMurray, Alberta, Canada. Synchrotron-based micro-X-ray fluorescence (μXRF) and micro-X-ray absorption near edge structure (μXANES) spectroscopy show that Ni(II)-porphyrin complexes dominate, but inorganic phases including Ni(II)-sulfide and Ni(II)-oxide comprise a minor component of fluid coke. Sequential chemical extractions suggested that sorption–desorption reactions may influence Ni mobility within fluid coke deposits. Although only a small proportion of total Ni (<4%) is susceptible to leaching under environmentally relevant concentrations, dissolved Ni concentrations (n = 65) range from 2 to 120 μg·L−1 (median 7.8 μg·L−1) within the two deposits and generally decrease with depth below the water table. Pore water Ni concentrations are negatively correlated with pH, but not with dissolved sulfate, bicarbonate, or chloride. Overall, our findings suggest that pore water pH and sorption–desorption reactions are principal controls on dissolved Ni concentrations within oil sands fluid petroleum coke deposits.
- OPEN ACCESS
- Leonora King,
- Lucy MacKenzie,
- Marc Tadaki,
- Sara Cannon,
- Kiely McFarlane,
- David Reid, and
- Michele Koppes
Effective policies promoting diversity in geoscience require understanding of how the values and practices of the community support the inclusion of different social groups. As sites of knowledge exchange and professional development, academic conferences are important culturing institutions that can alleviate or reproduce barriers to diversity in geoscience. This study examines diversity at a 2017 geoscience conference, the joint Canadian Geophysical Union and Canadian Society of Agricultural and Forest Meteorology annual meeting, through observation of participation, presentation content, and behaviour in conference sessions. Across 256 observed presentations, women constituted 28% of speakers, whereas women of colour made up only 5%. Participation rates differed between disciplinary sections, with the most populous sessions (Hydrology and Earth Surface) having the lowest percentage of women. Examination of presentation content reveals that the methods and scholarly contributions of both women and people of colour differed from the majority, suggesting an intellectual division of labour in geoscience. Examination of audience behaviours between presenters reveals how a “chilly climate” can be experienced by women and other marginalized demographics in conferences. We argue that there is more to be done than simply increasing numbers of women or other minorities in geoscientific spaces, and we suggest pathways to making geoscience a more inclusive and democratic pursuit. - OPEN ACCESSMultiparameter data with both spatial and temporal components are critical to advancing the state of environmental science. These data and data collected in the future are most useful when compared with each other and analyzed together, which is often inhibited by inconsistent data formats and a lack of structured documentation provided by researchers and (or) data repositories. In this paper we describe a linked table-based structure that encodes multiparameter spatiotemporal data and their documentation that is both flexible (able to store a wide variety of data sets) and usable (can easily be viewed, edited, and converted to plottable formats). The format is a collection of five tables (Data, Locations, Params, Data Sets, and Columns), on which restrictions are placed to ensure data are represented consistently from multiple sources. These tables can be stored in a variety of ways including spreadsheet files, comma-separated value (CSV) files, JavaScript object notation (JSON) files, databases, or objects in a software environment such as R or Python. A toolkit for users of R statistical software was also developed to facilitate converting data to and from the data format. We have used this format to combine data from multiple sources with minimal metadata loss and to effectively archive and communicate the results of spatiotemporal studies. We believe that this format and associated discussion of data and data storage will facilitate increased synergies between past, present, and future data sets in the environmental science community.
- OPEN ACCESSThe identification of sustainably managed fisheries is problematic for marketers and consumers of Pacific salmon food products owing to lack of well-defined and robust criteria that take into account current ecosystem science of salmon. We present the rationale for an alternative conceptual framework for salmon management that supports the development of sustainable sourcing criteria. Our approach contrasts with current large-scale fisheries certification programs such as that of the Marine Stewardship Council (MSC) and general consumer recommendation services such as Monterey Bay Aquarium’s Seafood Watch (SFW) program. Our framework is based on the “place-based” character of salmon populations and recognition of fundamental aspects of salmon ecology, particularly the evolution of population life histories that are locally adapted to freshwater spawning and rearing habitats. We describe how this framework underpins development of science-based sourcing criteria and how it differs in important respects from the industrial approach that historically and currently is the basis for most salmon management. We conclude with a discussion of how the framework and its application may provide a model for redirecting salmon management, in general, towards a more science- and place-based approach and why that is likely to be sustainable in the long term in a way that most contemporary salmon management is not.
- OPEN ACCESSAn increase in greenhouse gas emissions has led to a rise in average global air and ocean temperatures. Increased sea surface temperatures can cause changes in species’ distributions, particularly those species close to their thermal tolerance limits. We use a bioclimate envelope approach to assess potential shifts in the range of marine macroalgae harvested in North American waters: rockweed (Fucus vesiculosus Linnaeus, 1753), serrated wrack (Fucus serratus Linnaeus, 1753), knotted wrack (Ascophyllum nodosum (Linnaeus) Le Jolis, 1863), carrageen moss (Chondrus crispus Stackhouse, 1797), and three kelp species (Laminaria digitata (Hudson) J.V. Lamouroux, 1813; Saccharina latissima (Linnaeus) C.E. Lane, C. Mayes, Druehl et G.W. Saunders, 2006; and Saccharina longicruris (Bachelot de la Pylaie) Kuntze, 1891). We determined species’ thermal limits from the current sea surface temperatures associated with their geographical distributions. Future distributions were based on sea surface temperatures projected for the year ∼2100 by four atmosphere-ocean general circulation models and earth system models for regional concentration pathways (RCPs) 4.5 and 8.5. Future distributions based on RCP 8.5 indicate that the presence of all but rockweed (F. vesiculosus) is likely to be threatened by warming waters in the Gulf of St. Lawrence and along the Atlantic coast of Nova Scotia. Range retractions of macroalgae will have significant ecological and economic effects including impacts on commercial fisheries and harvest rates and losses of floral and faunal biodiversity and production, and should be considered in the designation of marine protected areas.
- OPEN ACCESSIn 1956, Shell Oil Company geologist M. King Hubbert published a model for the growth and decline over time of the production rates of oil extracted from the land mass of the continental US. Employing an estimate for the amount of ultimately recoverable oil and a logistic curve for the oil production rate, he accurately predicted a peak in US oil production for 1970. His arguments and the success of his prediction have been much celebrated, and the original paper has 1400 publication citations to date. The theory of “peak oil” (and subsequently, of natural resource scarcity in general) has consequently become associated with Hubbert and “Hubbert” curves and models. However, his prediction for the timing of a world peak oil production rate and the subsequent predictions of many others have proven inaccurate. We revisit the Hubbert model for oil extraction and provide an analysis of it and several variants in the language of (time) autonomous differential equations.
- OPEN ACCESS
- Michael R.S. Coffin,
- Simon C. Courtenay,
- Kyle M. Knysh,
- Christina C. Pater, and
- Michael R. van den Heuvel
In this study, we examined the effects of dissolved oxygen, via metrics based on hourly measurements, and other environmental variables on invertebrate assemblages in estuaries spanning a gradient of nutrient loading and geography in the southern Gulf of St. Lawrence, Canada. Upper areas (15–25 practical salinity units (PSU)) of 13 estuaries that were dominated by either seagrass (Zostera marina Linnaeus, 1753) or macroalgae (Ulva spp. Linnaeus, 1753) were sampled from June to September 2013. Macroinvertebrate assemblages from Z. marina were found to be distinct from Ulva assemblages for both epifauna and infauna. Small snails dominated each vegetation type, specifically cerithids in Z. marina and hydrobids in Ulva. Although Z. marina had higher species richness, approximately 70% of species were common to both habitats. Faunal communities differed among estuaries with large, within-estuary, temporal variance only observed at Ulva sites impacted by hypoxia and particularly at sites with long water residence time. Indeed, abundances varied by several orders of magnitude in Ulva ranging from zero to thousands of macroinvertebrates. There was a strong negative correlation between hypoxic or anoxic water, 48 h prior to sampling, with relative abundances of amphipods, and a positive correlation with the relative abundances of snails. As one of the first studies to use high-frequency oxygen monitoring, this study revealed probable impacts and the transient nature of hypoxia in eutrophication. - OPEN ACCESS
- Mathieu Guillemette,
- Catherine Potvin,
- Lauliano Martinez,
- Bonarge Pacheco,
- Dioniz Caño, and
- Ignacio Pérez
Natural forest management and conservation projects such as reducing emissions from deforestation and forest degradation, and enhancing forest carbon stocks (REDD+) face many challenges in the field. Implementation of these projects depends on such factors as clarity of information among stakeholders, legal security of territories, and local decision-making power. These challenges have been previously identified in the Upper Bayano watershed of eastern Panama, where a long history of land cover and land-use conflicts is present between three different human groups. With a long-term objective of natural forest conservation, this study aims to develop and test participatory approaches (participatory mapping and participatory 3D modelling) for the Upper Bayano watershed in an attempt to create a consensus among all stakeholders on current land cover and land-use conflicts to overcome challenges faced by projects as REDD+. We found that the third dimension allows a common understanding over the landscape, creates a common ground discussion, and leads towards a consensus, while the participatory approach brings discussion and positive effects among the stakeholders and the bridging institutions bring equity and transparency. Finally, we discuss implications of this knowledge generation and common agreement over the landscape for future forest management projects such as REDD+’s implementation. - OPEN ACCESSWith increasing input of neurotoxic mercury to environments as a result of anthropogenic activity, it has become imperative to examine how mercury may enter biotic systems through its methylation to bioavailable forms in aquatic environments. Recent development of stable isotope-based methods in methylation studies has enabled a better understanding of the factors controlling methylation in aquatic systems. In addition, the identification and tracking of the hgcAB gene cluster, which is necessary for methylation, has broadened the range of known methylators and methylation-conducive environments. Study of abiotic factors in methylation with new molecular methods (the use of stable isotopes and genomic methods) has helped elucidate the confounding influences of many environmental factors, as these methods enable the examination of their direct effects instead of merely correlative observations. Such developments will be helpful in the finer characterization of mercury biogeochemical cycles, which will enable better predictions of the potential effects of climate change on mercury methylation in aquatic systems and, by extension, the threat this may pose to biota.
- OPEN ACCESSWe examine the importance of the rock weathering feedback mechanism during the last deglacial period (∼16 000–4000 BCE) using an Earth system model of intermediate complexity (the University of Victoria Earth System Climate Model (UVic ESCM)) with four box-model parameterizations of terrestrial weathering. The deglacial climate change is driven by changes in orbital parameters, ice core reconstructions of atmospheric CO2 variability, and prescribed removal of continental ice sheets. Over the course of the 12 000 year simulation period, increases in weathering provide a mechanism that slowly removes CO2 from the atmosphere, in opposition to the observed atmospheric CO2 increase during this period. These processes transfer both carbon and alkalinity to the ocean, the combination of which results in as much as a 1000 Pg C increase in total ocean carbon, relative to a control simulation with constant weathering. However, the rapid expansion of northern hemisphere vegetation introduces a significant uncertainty among the weathering parameterizations. Further experiments to test the individual impacts of weathering dissolved inorganic carbon and alkalinity fluxes on ocean biogeochemistry suggest that the worldwide distribution of rock types and the ratio of carbonate to silicate weathering may be crucially important in obtaining an accurate estimate of changes in global weathering rates.