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  • OPEN ACCESS
    Winter diet of five sympatric ungulates in west-central Alberta, Canada—inference from DNA metabarcoding of fecal pellets
    FACETS • Vol. 10 • pp. 1 - 13
    Diet is one of the determinants of ungulate ecology. However, there have been few studies of the diet of sympatric ungulates in western Canada. We used DNA metabarcoding of fecal samples to evaluate the winter diet of white-tailed deer (Odocoileus virginianus), mule deer (O. hemionus), moose (Alces americanus), elk (Cervus canadensis), and caribou (Rangifer tarandus caribou) in west-central Alberta. We found that forbs comprised 53%–82% of the reads from plant DNA, while mosses, sedges, grasses, and shrubs made up relatively little of each ungulate’s diet. There was considerable overlap in the winter diet of the five ungulates (Horn-Morisita index = 42%–64% overlap; Bray-Curtis index = 20%–45% overlap). Moose had the most distinct diet, while elk and caribou had the least distinct. However, our analysis was restricted to a coarse taxonomic resolution (family). Lichen species were not identifiable, beyond their fungal component and a number of taxonomic assignments were difficult to rationalise given our knowledge of the diet of the five ungulate species and the ecology of west-central Alberta, Canada. DNA metabarcoding of fecal samples is efficient, but apparent limitations with the technique restrict the description and quantification of diet of the five species of ungulate that we studied.
  • OPEN ACCESS
    The effect of nutrient transport downstream on food web stability in an experimental freshwater meta-ecosystem
    FACETS • Vol. 10 • pp. 1 - 15
    Recent spatial nutrient transport theory suggests that accumulation of nutrients downstream in riverine systems can amplify the magnitude of phytoplankton and zooplankton blooms and/or lead to competitive replacement of phytoplankton by less edible species, such as cyanobacteria. We used an experimentally controlled three-node network of freshwater mesocosms with green algae, cyanobacteria, and Daphnia magna to test these hypotheses. Nutrients and detritus accumulated significantly downstream, reaching maximum values in the terminal nodes, resulting in small increases in abundance for green algae and D. magna populations. Stability analysis from the Lotka–Volterra competition model for green algae and cyanobacteria did not provide evidence of complete competitive exclusion, but cyanobacteria projected to equilibrate at densities 50% higher than those of green algae in all nodes. Our results support the theoretical prediction that unidirectional flow in riverine systems contributes to accumulation of nutrients downstream and increased heterotrophic bacterial activity, but these changes were of insufficient magnitude to produce variance- or mean-driven destabilization of food web relationships downstream in our experimental system.
  • OPEN ACCESS
    No evidence of migration in a 4-year study of an at-risk migratory fish—the centenarian bigmouth buffalo (Ictiobus cyprinellus) of Saskatchewan
    FACETS • Vol. 10 • pp. 1 - 10
    The bigmouth buffalo (Ictiobus cyprinellus, Valenciennes 1844) is a long-lived freshwater fish native to North America that is listed as a species of special concern in its Saskatchewan-Nelson range. Little is known about their ecology and behavior, especially in the Saskatchewan Qu'Appelle River system where it faces multiple threats such as habitat fragmentation and competition with invasive species. In this study, we used acoustic telemetry to track the movements of 44 bigmouth buffalo throughout the Qu'Appelle River system in 2017–2019, and 2021, to monitor migration patterns from spring to fall and investigate if any of the five dams were impeding their ability to access either breeding or overwintering grounds. We found that bigmouth buffalo demonstrated minimal use of the river during this 4-year study, instead staying within the confines of a single lake year-round. Our results suggest that bigmouth buffalo in the Qu'Appelle River do not exhibit migratory behavior during nonflooding years. Considering their extended lifespan (>125 years), this could be attributed to their potential bet-hedging strategy for spawning primarily during flood years. The results indicate that bigmouth buffalo voluntarily remained within Buffalo Pound Lake throughout the study period. Whether this behavior was natural or was influenced by modifications to the system’s hydrology requires further investigation.
  • OPEN ACCESS
    Multifacets in silico study of Plant Defensin 1.1 protein (PDF1.1) in Brassica rapa (turnip)
    FACETS • Vol. 10 • pp. 1 - 16
    Brassica rapa (turnip) belongs to the Brassicaceae family. Due to the diseases caused by fungal pathogens such as Erysiphe cruciferarum, Alternaria japonica, and Alternaria brassicae, the yield of B. rapa was reduced in many Asian and European countries. Plant defensins (PDFs) are proteins that have antifungal properties. This research aimed to comprehend the key attributes of B. rapa PDF 1.1s by incorporating a wide range of in silico approaches. Initially, we explored orthologues of PDF 1.1 in B. rapa through Blastp in Phytozome v.13 which highlighted fourteen different orthologues. Afterward, by using Mega X, the homology of B. rapa PDF1.1 proteins with Arabidopsis thaliana PDF1.1 proteins was also inferred. While, the results of NCBI CD show that these proteins possessed a common domain, i.e., gamma-thionin. The major findings of this study included the crucial characteristics of PDF1.1 proteins that were explored by utilizing the PANZZER2 web server and BlastKOALA, which proposed that these proteins possessed degradation ability of pathogen’s cells and were also found to be involved in a mitogen-activated protein kinase signaling pathway. Overall, this research provided a better understanding of the crucial contribution of B. rapa PDFs 1.1 under biotic stress specifically, the pathogenic fungal attack.
  • OPEN ACCESS
    The many pathways of climate change affecting coastal ecosystems: a case study of western Vancouver Island, Canada
    FACETS • Vol. 10 • pp. 1 - 18
    Climate change threatens marine ecosystems with known effects on marine life, including changes in metabolic rates, survival, and community structure. Based on a structured literature review, we developed a conceptual “pathways of effects” model that summarizes how three stressors associated with climate change (warming, acidification, and storms) affect functional species groups on the West Coast of Vancouver Island, Canada. We identified 155 distinct pathways from the three stressors through 12 categories of biological effects ranging from changes in the biochemistry of individual organisms to effects on community composition. Most species groups were affected by several climate stressors and via many pathways, although individual studies generally considered only a small fraction of relevant pathways. These effects depended on the species of interest and geographical location, highlighting the importance of local research. Climate change stressors exert complex, sometimes contradictory effects that vary across ecological scales. For example, some stressors that adversely affected a species in laboratory studies appeared beneficial in community-scale field studies. Pathways of effects models are helpful tools to summarize scientific studies across ecological scales. Compiling them in standardized databases would allow researchers and practitioners to search across species and regions to better support ecosystem-based management and environmental impact assessment.
  • OPEN ACCESS
    Does selenium offset methylmercury toxicity across trophic levels in a primary producer, Auxenochlorella pyrenoidosa, and a detritovore, Aeolosoma variegatum?
    FACETS • Vol. 10 • pp. 1 - 13
    Methylmercury ([CH3Hg]+ or MeHg) is a potent neurotoxin that impairs functioning of the nervous system, and selenium (Se) is known to provide a protective effect against MeHg. Experiments were run to investigate the expected offsetting of MeHg toxicity by Se across trophic levels at the base of the aquatic food chain. An algal primary producer, Auxenochlorella pyrenoidosa, was exposed to MeHg (2 µg L−1) in the presence or absence of varying levels of Se (0 µg L−1, 2 µg L−1, and 5 µg L−1). Results showed that MeHg decreased the maximum density of Auxenochlorella, which Se did not offset. Equal amounts (8 mg) of the algal biomass produced under exposure conditions were subsequently fed to a detritovore, Aeolosoma variegatum (a small freshwater annelid worm). When consuming dietary Se in MeHg contaminated water, or when consuming dietary Se with dietary MeHg, Aeolosoma populations experienced a rescue effect against MeHg, i.e., they achieved greater final population density. Understanding safe levels of dietary Se that provide population level protection against MeHg is a critical step towards managing mercury in contaminated ecosystems.
  • OPEN ACCESS
    Evaluation of a decade of management of a North American aquatic invasive species (Nitellopsis obtusa) highlights scale-dependent effectiveness and monitoring gaps
    FACETS • Vol. 10 • pp. 1 - 14
    Nitellopsis obtusa (starry stonewort) is an invasive macroalga subject to substantial control efforts in the Midwestern United States; however, there has not been systematic evaluation of treatment effectiveness. We synthesized management approaches and outcomes using monitoring performed over a decade-long period across 38 lakes in Indiana, Wisconsin, and Minnesota. Copper-based algaecide treatments were the primary means of control, followed by physical removal methods or combination treatments. Control efforts and associated monitoring data varied by spatial scale, as did surveyors’ N. obtusa sampling methods. At the largest (whole-lake) scale, we found no evidence that algaecide treatments were slowing expansion or reducing abundance of N. obtusa within infested lakes. At smaller, within-lake scales, we found that algaecide and physical treatments could reduce N. obtusa frequency and biomass, but outcomes were highly variable. At the smallest scales, hand pulling was an effective containment strategy for small, localized populations that were detected early. These results highlight the need to set realistic goals for N. obtusa control and develop improved management techniques. There were also critical gaps in monitoring that limited our ability to evaluate treatment effectiveness. In particular, increased monitoring of unmanaged reference lakes and untreated areas within managed lakes is needed.
  • OPEN ACCESS
    Investigating the potential uptake of microplastic-derived carbon into a boreal lake food web using carbon-13 labelled plastic
    FACETS • Vol. 10 • pp. 1 - 9
    Microplastics degrade slowly over time, leaching carbon (C) that could be subsequently incorporated into aquatic food webs. Current estimates of microplastic degradation vary, and little is known about microplastic-derived C fate under natural environmental conditions. To investigate whether microplastics leach C that is subsequently incorporated into aquatic food webs, we added isotopically enriched microplastics to Lake 378 at the Experimental Lakes Area in Ontario, Canada. In an ∼1100 L limnocorral (in situ open-bottom enclosure), we added 99% 13C-labelled polystyrene (8–216 µm in longest dimension) at a nominal concentration of 3268 particles/L. A second limnocorral without microplastics served as a negative control. Monthly measurements of δ13C-DIC and δ13C-DOC in filtered water revealed no detectable leaching of 13C from the plastic. Compound-specific isotope analysis of δ13C in amino acids of bulk plankton and periphyton revealed a slight (0.5‰) enrichment in 13C, within the range of natural variability for these organisms. Under the natural conditions of temperate oligotrophic lakes, degradation of microplastics is likely a very slow process that was not possible to detect in this 4-month experiment. Future studies should focus on assessing degradation of microplastics under realistic field scenarios to improve estimates of degradation pathways and associated time scales.
  • OPEN ACCESS
    Data and knowledge needs for improving science and policy for peatlands in Canada in a changing world: insights from Global Peatlands Initiative Workshop, June 2023
    FACETS • Vol. 10 • pp. 1 - 19
    Knowledge and data on the current function, future threats, and benefits of peatlands in Canada are required to support evidence-based decision-making to ensure they continue to provide critical ecosystem services. This is particularly relevant for Canada, given the large expanse of relatively intact peatland area. There is a need, not only to standardize protocols, but also to prioritize types of information and knowledge that can best meet conservation and management goals. This was the challenge posed to the participants of the Global Peatlands Initiative workshop in June 2023 in Quebec City, Quebec, Canada. Participants were composed of researchers using primarily Western science approaches that use peatland data for carbon accounting, policy or sustainable land use, reclamation/restoration, conservation, wildlife, and water resources applications. For seven peatland data categories (hydrometeorological and environmental sensing; peat coring and depth; greenhouse gas monitoring; biodiversity; vegetation, woody debris, and litter; Traditional Knowledge; water quality), three priority measurements were identified and recommendations for their collection were discussed. The key recommendations from the workshop were to (1) create standardized, yet flexible protocols; (2) coordinate field data collection where possible; (3) weave more Traditional Knowledge into understanding of peatlands; (4) create an atlas of existing peatland information; (5) scope opportunities to create a network of peatland “super sites”.
  • OPEN ACCESS
    Anthropogenic impacts on seagrass habitat connectivity: a model to explore potential links between human activity and marine invertebrate metapopulation persistence
    FACETS • Vol. 10 • pp. 1 - 15
    Coastal ecosystems face numerous stressors from anthropogenic activities. Furthermore, local stressors that directly impact ecological processes in one location can scale up to have indirect regional consequences. In the case of dispersing marine invertebrates, human activity may impact dispersal and survival rates, which can then alter connectivity patterns and metapopulation dynamics across the seascape. Here, we developed a framework to model metapopulation persistence of seagrass-associated invertebrates in the Salish Sea, focusing primarily on British Columbia, Canada. We combined a biophysical model of dispersal with metrics of habitat naturalness to model how local human activities that may impact dispersal can alter habitat connectivity patterns and potentially impact regional metapopulation persistence. We found that human activities that potentially impact dispersal can reduce population persistence across a region, although the effect varied based on location, population dynamics, and severity of the impacts modeled. The majority of populations, however, remained persistent, suggesting that there are robust and redundant pathways of dispersal that can maintain population connectivity in the face of local disturbances. This study highlights the importance of understanding human impacts and connectivity together in a regional context which could have implications for future marine spatial planning and the effective management of biodiversity.
  • OPEN ACCESS
    Note of appreciation
      FACETS • Vol. 10 • pp. 1
    • OPEN ACCESS
      Correction: Spatial and seasonal determinants of arthropod community composition across an agro-ecosystem landscape
      FACETS • Vol. 10 • pp. 1 - 7
    • OPEN ACCESS
      Naphthenic acid fraction compounds, produced by the extraction of bitumen from oil sands, alter survival and behaviour of juvenile yellow perch (Perca flavescens)
      FACETS • Vol. 9 • pp. 1 - 12
      We evaluated whether naphthenic acid fraction compounds (NAFCs) extracted from oil sand tailings adversely affect fish survival and behaviour. Following a before–after-control-impact design, we housed wild-caught juvenile yellow perch (Perca flavescens) in outdoor mesocosms to assess survival and behaviour under baseline conditions, then exposed fish to one of three treatments: negative control, 2 mg/L NAFC, or 15 mg/L NAFC. We performed behavioural assays (no-stimulus activity, food stimulus, and predator stimulus using a model bird) and assessed a comprehensive suite of endpoints (equilibrium losses, activity, shoaling, burst swimming, freezing, and space use). We found that exposure to 15 mg/L NAFCs substantially reduced fish survival and impaired fish equilibrium in all three behavioural tests. Furthermore, exposure to NAFCs impaired anti-predator behaviour: while the activity of control fish increased by two-fold in response to a predator stimulus, fish exposed to 2 or 15 mg/L NAFC did not change their activity levels after stimulation. No significant changes were observed in other behavioural endpoints. Overall, our findings suggest that a week-long exposure to NAFCs at concentrations commonly found in tailings ponds, constructed wetlands, and other mining-impacted waters may affect multiple facets of fish behaviour that could ultimately lead to reduced fitness in fish populations.
    • OPEN ACCESS
      What is habitat sensitivity? A quantitative definition relating resistance, resilience, and recoverability to environmental impacts
      FACETS • Vol. 9 • pp. 1 - 9
      Habitat sensitivity is a consideration for decision-making under environmental laws in many jurisdictions. However, habitat sensitivity has been variously defined and there is no consistent approach to its quantification, which limits our understanding of how habitat sensitivity varies among systems and in response to different pressures. We review various definitions offered in the scientific literature and policy documents before suggesting a universal framework for habitat sensitivity as (i) a habitat trait that defines the ecological impacts from a given pressure, (ii) which is composed of three components (habitat resistance, resilience, and recoverability), and (iii) which is quantified by measuring the change and recovery in the state of key habitat attributes in response to pressures. In addition, we provide guidance toward a consistent approach to assessing habitat sensitivity, which includes the use of pressure benchmarks and standardized metrics of change in key habitat attributes to create a common scale for comparison among habitat attributes and pressures. Our framework and recommendations should help to standardize the way in which habitat sensitivity is defined and assessed, and could be integrated into decision-making processes to improve ecosystem management in different jurisdictions.
    • OPEN ACCESS
      Niche partitioning of bobcat and Canada lynx near their distribution contact zone
      FACETS • Vol. 9 • pp. 1 - 11
      Canada lynx (Lynx canadensis) are keystone predators. However, contact with congenerics, like the bobcat (Lynx rufus), could alter lynx trophic ecology and destabilize boreal food webs. We set out to describe the trophic niches of these species in allopatry and sympatry to assess how resources are partitioned among them and project whether the northward expansion of the bobcats’ range will lead to the displacement of lynx. To quantify the trophic niche, we measured stable isotopes of carbon and nitrogen in muscle and liver samples of bobcat and lynx. Our results indicate that both bobcat and lynx consumed snowshoe hare as their primary prey. However, lynx specialized on hare throughout our study, whereas bobcats foraged as generalists in sympatry with lynx and hare-specialists in allopatry. Our results highlight the contrasting ecological strategies of two congeneric felids and underscore the potential relevance of foraging efficiency in shaping the trophic niche of consumers in competitive environments.
    • OPEN ACCESS
      Conducting community-led research using trail cameras to develop baseline wandering domestic cat local abundance estimates
      FACETS • Vol. 9 • pp. 1 - 14
      Assessing cat local abundance provides information on where wandering cat numbers are highest and what habitats or factors are associated with wandering cats. A variety of stakeholders can lead this research and then use the findings to make scientifically informed decisions to guide the physical locations of cat management actions. Here, we document a framework that engages community members, uses minimal equipment (six trail cameras), and provides scientifically derived information for interested parties to inform, direct, or test the effectiveness of cat management practices. Using these methods in Gatineau, Quebec, Canada, we demonstrate how we estimated cat population size and cat local abundances across a variety of co-variates while accounting for non-perfect detection by using 55 trail camera sites and N-mixture models. Urban areas had three-fold higher local wandering cat abundances than parkland areas, and neighbourhoods below the median income had the highest local abundances of wandering cats. We estimated there are between 8905 and 48,419 (mean 21,298) wandering cats in Gatineau, with 18%–73% of those cats being unowned. These findings can be used to identify locations for future cat management. If estimates of cat abundance are repeated, they can assess the effectiveness of management actions.
    • OPEN ACCESS
      Graduate student experiences and perspectives related to conducting thesis research within long-term ecological projects
      FACETS • Vol. 9 • pp. 1 - 12
      Long-term ecological research (LTER) projects are considered valuable training grounds for graduate student researchers, yet student voices are largely absent from discussions of LTER merits in the literature. We aimed to identify benefits and challenges encountered by current and former graduate students in conducting graduate research within LTER projects. To explore graduate student experiences and perspectives, we conducted a survey comprising both closed-ended questions (i.e., multiple choice and Likert scale) and open-ended questions. From the responses, we identified emergent categories related to positive and negative experiences using sentiment analysis. We found agreement with purported benefits in areas including networking and access to established field sites and protocols. However, participants also identified data accessibility, authorship decisions, communication, and interpersonal conflicts as significant sources of challenges. We synthesized survey results with existing literature to provide actionable recommendations for principal investigators in four main areas (data, authorship, communication, and management) through an LTER lens. In addition to providing longitudinal data, LTER projects offer graduate students both physical and methodological infrastructure that can serve as the scaffold for new research questions to be developed. However, the likelihood of success of student research, as well as the success of the students themselves, can be improved when the needs of graduate students are prioritized.
    • OPEN ACCESS
      Social media-based community science for turtle nest monitoring and conservation
      FACETS • Vol. 9 • pp. 1 - 7
      In late 2020, a private volunteer group operating through a Facebook group approached Toronto and Region Conservation Authority (TRCA) with an interest in participating in the Citizen Science Nest Protection and Monitoring Volunteer Program. During the 2021 season, TRCA staff virtually trained volunteers in turtle nest detection, protection, and monitoring due to COVID-19 social constraints, and provided necessary supplies and equipment. In 2021 volunteers and staff detected 181 turtle nests and were able to protect 75 nests with simple predator-exclusion devices, while in 2022, 165 nests were detected, and 155 were protected. The volunteers also collected data, including nesting location, date, and species in addition to the number of successful hatchlings (2021 only). In 2021, the 75 protected nests yielded 81 Midland Painted Turtle and 665 Snapping Turtle hatchlings. Five Midland Painted Turtle’s eggs were also recovered from an injured turtle, and 44 Snapping Turtle eggs were recovered from a partially predated nest, transported to the Ontario Turtle Conservation Centre, incubated, hatched, and overwintered, and then released back into the local wetlands. The partnership with a local community group proved effective, and we would recommend this practice to other conservation organizations interested in turtle nest protection.
    • OPEN ACCESS
      Characterizing contemporary evolutionary change in a recently isolated population of threespine stickleback (Gasterosteus aculeatus L.)
      FACETS • Vol. 9 • pp. 1 - 16
      The parallel evolution of lateral plates and body shape in the threespine stickleback (Gasterosteus aculeatus) is an iconic example of adaptation. We test a case of contemporary evolutionary transition in a recently isolated population of marine G. aculeatus in British Columbia, Canada. We investigate Ectodysplasin (Eda) genotypes, plate counts, neutral genetic divergence, and whole-body phenotypes to determine the genetic and phenotypic distance between this population and nearby comparative populations. Our focal population is in the process of adapting both genetically and phenotypically to a freshwater environment, and we provide an example of the genetic basis for parallel evolution on a contemporary timescale. The frequency of Eda genotypes and lateral plate phenotypes in our focal population is not consistent with those of marine or fully freshwater populations. Although our focal population is genetically distinct from nearby marine populations, these fish still more closely resemble marine populations in overall body shape while demonstrating an intriguing intermediate phenotype. Eda frequency and lateral plate phenotype change faster than body shape in response to freshwater conditions, suggesting that the pace of adaptation differs across traits in response to the same environmental conditions. Our results further bolster the case for G. aculeatus as a key model of contemporary evolution.
    • OPEN ACCESS
      Management practices benefit endangered Poweshiek skipperling (Oarisma poweshiek) in Manitoba tall grass prairie
      FACETS • Vol. 9 • pp. 1 - 12
      Poweshiek skipperling (Oarisma poweshiek Parker, 1870) populations have declined precipitously in the past few decades, and their global range is now restricted to two isolated regions, one of which is the managed Manitoba tall grass prairie in Canada. In this paper, we used a decade of survey data from 2010 to 2019 to understand how habitat features, management practices, and extreme weather impact Poweshiek skipperling abundance in Manitoba. The strongest predictor of abundance was the density of black-eyed Susans (Rudbeckia hirta L.), a primary nectar plant for adults. Poweshiek skipperling abundance also had a negative relationship with both the number of years since a burn occurred and the number of years since grazing occurred. Cumulative precipitation during their active period (May–June) had a negative relationship with skipperling abundance, whereas warm early springs and cool temperatures during the active period had positive relationships. These results suggest that management actions that maintain tall grass prairie habitat in an early successional stage (burning and grazing) and maintain important nectar sources benefit this population. In contrast, extreme weather events had varying effects on Poweshiek skipperling abundance. Results from this study inform ongoing management practices in the Manitoba tall grass prairie to support this endangered population.
    • OPEN ACCESS
      Spatial and seasonal determinants of arthropod community composition across an agro-ecosystem landscape
      FACETS • Vol. 9 • pp. 1 - 15
      We used Malaise traps to sample arthropod community composition at biweekly intervals across an agroecosystem landscape in southern Ontario, Canada, to evaluate the relative impact of site spacing, seasonal timing, weather conditions, local plant community attributes, and agricultural extent across the local landscape on spatial and temporal variation in arthropod community composition. The 15 field sites sampled spanned a wide gradient of agricultural extent that in isolation had a strong impact on spatial variation in arthropod community composition. DNA metabarcoding of the samples identified >10 000 different arthropod biodiversity index numbers. Local variation in plant community composition and canopy cover best explained variation in arthropod community dissimilarity. Weather variables followed closely in explanatory power, driven primarily by seasonal variation in temperature. Significant effects of time remained after accounting for environmental variables, with little independent effect of spatial distance. The proportion of agricultural land at the landscape scale had little detectable effect after controlling for the influence of the other environmental variables. Our results suggest that plant community composition, cover, weather conditions, and seasonality structured the arthropod community to considerable degree.
    • OPEN ACCESS
      A comparison of approaches to quantify carbon for ecosystem service assessments through time
      FACETS • Vol. 9 • pp. 1 - 13
      Monitoring of global climate regulation ecosystem services is needed to inform national accounts, meet emission targets, and evaluate nature-based climate solutions. As carbon monitoring is context-dependent, the most useful methodological approach will depend on the spatial extent and resolution, temporal frequency, baseline, available data, funding, and dominant drivers of change, all of which will impact results and interpretation. Here, focusing on above and belowground carbon storage and sequestration, we review four groups of methods for estimating trends in carbon over time: (1) field-based measurements, (2) land cover maps with reference carbon values by land cover type, (3) statistical and machine learning models linking field measurements to remotely sensed data, and (4) mass balance models representing key carbon pools and flows between them. We discuss strengths, limitations, and best practices for each method to assist researchers in implementing an approach or critically evaluating whether an existing carbon dataset can be used for a different project. The best methods often account for spatial variability of carbon, ecosystem interconnections, and temporal stability of carbon stocks against future environmental changes. Effective carbon monitoring can help determine optimal conservation, restoration, and/or land management interventions with win-win outcomes for both conservation and nature-based climate solutions.
    • OPEN ACCESS
      Survey of rice (Oryza sativa L.) production ecosystems in northern Ghana confirms low risk of exposure to potential toxic elements from local grain consumption
      FACETS • Vol. 9 • pp. 1 - 7
      Expanding local rice production to meet consumer demand is a priority action under the Government of Ghana’s Planting for Food and Jobs initiative. While studies on yield-enhancing interventions abound, fewer studies focus on food safety issues (e.g., the potential toxic element status of the production ecosystems). This study was, therefore, conducted to bridge the knowledge gap. Chemical analyses were conducted on water, soil, and rice grain samples from different production ecosystems in the Northern and Upper East regions of Ghana. Statistical analysis of the data showed that soil and rice grain arsenic concentrations were significantly higher (P < 0.001) in the Upper East region. In the Northern region, mean cadmium concentration in rice grains from the irrigated lowland fields (0.023±0.003 mg/kg) was significantly higher than in grains from the rainfed fields. All recorded concentrations of rice grain arsenic, cadmium, and lead were, however, within permissible limits, indicating a low risk of dietary exposure. The observed differences in concentrations within and between regions suggest that soil texture and other geogenic factors could influence the potential toxic element status of the rice production ecosystems. Regular monitoring is, therefore, recommended to maintain the safety of Ghana’s locally produced rice for human consumption.
    • OPEN ACCESS
      A toolkit for greater equity, diversity, and inclusion in early-career ecology funding
      FACETS • Vol. 9 • pp. 1 - 9
      Funding is critical in ecology and related fields, as it enables research and sustains livelihoods. However, early-career researchers (ECRs) from diverse backgrounds are disproportionately underrepresented as funding recipients. To help funding programs self-evaluate progress towards increasing equity, diversity, and inclusion (EDI) in their funding opportunities, we introduce the Stage-based Assessments of Grants for EDI (SAGE) Toolkit. Developed using existing literature, semi-structured interviews, and coauthors’ experiences, the toolkit considers how each funding stage (Advertisement, Application, Review, Awarding) interacts with applicants from racialized and other underrepresented backgrounds. The toolkit offers specific criteria and recommendations, with explanations and examples from funding agencies, to support applicants who have been historically marginalized in ecology and are often left out of equitable funding consideration. Changes in funding mechanisms alone will not reverse the marginalization of communities and peoples in the field of ecology, but advancing EDI must include action throughout the grant process. Efforts to increase EDI must be sustained, and the toolkit allows for additional considerations and evolving best practices. With the SAGE Toolkit, efforts to increase EDI can help to transition away from a transactional dynamic between funder and applicant to instead supportive community and collaboration. The SAGE Toolkit is available online at bit.ly/ediSAGEtoolkit.
    • OPEN ACCESS
      Now is the time for academics to think and act beyond academia
      FACETS • Vol. 9 • pp. 1 - 3
      Despite the challenges posed by climate change and the biodiversity crisis, most academic research continues to stay within academia and the gaps between conservation science, policy, and practice remain intact. We need to improve the exchange of evidence between researchers and conservation practitioners and focus on solutions-oriented, interdisciplinary science and co-developed research. As we continue to break climate records and lose record numbers of species every year, now is the time for academics to think and act beyond their institutions.
    • OPEN ACCESS
      Heliocaminiform structures: plant organs that function as microgreenhouses
      FACETS • Vol. 9 • pp. 1 - 20
      Plant structures that enclose trapped air are morphologically and taxonomically diverse. They range from pubescence (trichomes) on various parts of plants to flowers, inflorescences, stems, culms (above-ground jointed stems of grasses), petioles, peduncles, scapes, fruits, bracts, leaves, galls, algal pneumatocysts, moss sporophytes, lichen podetia, and fungal fruiting bodies. Despite being familiar, such structures have not been studied systematically until recently when their complex thermodynamic functionality as microgreenhouses has been recognized. We propose the term “heliocaminiform” (Greco-Latin origin for “sun-room”) provides an umbrella term that describes form and function. Almost all the hollow structures we have examined have elevated internal temperatures of several degrees C above the surrounding air in sunshine, but those are abolished under cloud or at night. The potential importance for the additional heat is presumed to be in growth, maturation, reproduction, sexual function, and overall fitness of the plants. There seem to be no experimental studies on those effects even though they may help explain aspects of plants’ responses to climate change and to phenological mismatches with symbionts (mutualists and herbivores) as ecologically co-dependent partners. Our review and observations opens a remarkably new and hitherto surprisingly neglected avenue in botany which we hope others will explore.
    • OPEN ACCESS
      Still using genetic data? A comparative review of Canadian life insurance application forms before and after the GNDA
      FACETS • Vol. 9 • pp. 1 - 10
      Genetic testing's increased availability has raised concerns about “genetic discrimination” (GD), where individuals may face unfair treatment, particularly when purchasing personal insurance, because of their genetic characteristics. In 2017, Canada passed the Genetic Non-Discrimination Act (GNDA) to prevent GD. This manuscript reviews post-GNDA life insurance application forms and compares them with pre-2014 application forms to assess the impact of the GNDA on insurance practices in Canada. Based on our comparative assessment, we found that the GNDA has had a modest impact on the practice of life insurers in Canada. Our study also confirms that questions about family history of disease and broadly formulated inquiries are still used on life insurance application forms. Both can, in the absence of clear instructions, lead applicants to disclose protected genetic information.
    • OPEN ACCESS
      Ideal free distributions form across a regulatory boundary in the Northwest Atlantic Fisheries Organization (NAFO) Division 4X and 5Z groundfish fisheries
      FACETS • Vol. 9 • pp. 1 - 9
      We used isodars, developed from the ideal free distribution (IFD), to predict the distribution of fishing effort across regulatory boundaries in the south-western Scotian Shelf’s haddock fishery. Our analysis was focused around the boundary between Northwest Atlantic Fisheries Organization’s Divisions 4X and 5Z. While effort within 4X was related to the standardized catch value and effort experienced along the 4X–5Z boundary, most effort predictions across the boundary were also accurate. Accuracy of these cross-boundary isodars suggests that a high degree of movement across the boundary meets the IFD assumption of free movement and thus, effort on one side of the boundary is related to fishing success on the other side of the boundary. Fisheries management strategies should adopt a broad view that encompasses adjacent regulatory regions to understand where vessels may choose to fish when multiple regulatory regions are accessible. In fisheries where isodars describe effort distributions across a regulatory boundary, the relative abundance of the underlying fish population could be better indicated by effort distribution among regulatory regions than by catch rates.
    • OPEN ACCESS
      Evaluating the design of the first marine protected area network in Pacific Canada under a changing climate
      FACETS • Vol. 9 • pp. 1 - 18
      Marine protected area (MPAs) networks can buffer marine ecosystems from the impacts of climate change by allowing species to redistribute as conditions change and by reducing other stressors. There are, however, few examples where climate change has been considered in MPA network design. In this paper, we assess how climate change considerations were integrated into the design of a newly released MPA network in the Northern Shelf Bioregion in British Columbia, Canada, and then evaluate the resulting network against projected physical and biogeochemical changes and biological responses. We found that representation, replication, and size and spacing recommendations integrated into the design phase were met in most cases. Furthermore, despite varying degrees of projected changes in temperature, dissolved oxygen, and aragonite saturation across the MPA network, suitable habitat for demersal fish species is projected to remain in the network despite some redistribution among sites. We also found that mid-depth MPAs are particularly important for persistence, as fish are projected to move deeper to avoid warming in shallower areas. Our results highlight that a representative MPA network with adequate replication, that incorporates areas of varying climate change trajectory, should buffer against the impacts of climate change.
    • OPEN ACCESS
      Estimating size-at-harvest from Indigenous archaeological clamshell assemblages in Coastal British Columbia
      FACETS • Vol. 9 • pp. 1 - 15
      Shellfish have supported Indigenous lifeways on the Pacific Coast of North America for millennia. Despite the ubiquity of clamshells in archaeological sites, shell size measurements are rarely reported due to a lack of applicable basis for generating size estimates from fragmentary remains. We present a linear regression-based method for determining shell length from hinge and umbo measurements of littleneck (Leukoma staminea; n = 239), butter (Saxidomus gigantea; n = 274), and horse (Tresus nuttallii; n = 92) clams using both contemporary and archaeological shells collected from three regions in coastal British Columbia, Canada. We examine the accuracy of these size estimations, which indicate that 83%–97% of the variability in dorsal shell length is predicted by umbo thickness and hinge length. Hinge length generated higher R2 values yet exhibited greater intra- and inter-observer error. While the predicted dorsal length for each species differed by region, this size difference was smaller than intra- and inter-observer error, suggesting broad applicability for these simple measurements. We applied these formulae to a Tseshaht First Nation archaeological clamshell assemblage (n = 488) on western Vancouver Island spanning 3000 years and observed profiles that resemble contemporary legal size limits, which suggests the sustained use and maintenance of local shellfisheries. The accuracy of these regression models for determining shell length from fragments highlights the utility of this approach as a basis for assessing past shellfish management practices.
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      Burrow nests fall below critical temperatures of threatened seabirds but offer thermal refuge during extreme cold events
      FACETS • Vol. 9 • pp. 1 - 11
      Climate change is altering the severity and intensity of extreme weather events. Occupying microhabitats that buffer extreme weather may help species avoid harsh environmental conditions. We describe the thermal microclimate of Atlantic Puffin (Fratercula arctica) and Leach’s Storm-petrel (Hydrobates leucorhous) burrows and quantify whether burrows are thermal refuges during extreme cold weather events. We further test for the effect of weather conditions and burrow characteristics on nest microclimate and buffering capacity during extreme cold weather. We find that both species actively breed in burrow microclimates that are below their lower critical temperatures, which may impose significant thermoregulatory costs. However, burrows do act as thermal refuges because nests are kept 7.4–8.0 °C warmer than ambient temperatures during extreme cold weather events. Overall, external temperature and wind speed were strong drivers of burrow temperature, but burrow and habitat characteristics did not explain the variability in burrow buffering capacity during extreme cold weather. Our results suggest that burrows may provide a direct line of defence for seabird chicks against cold events. Given the complex responses of burrow microclimates to extreme events, quantifying how changes in environmental conditions will impact burrow-nesting seabirds in the future is key.
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      The long-term effects of water resource development on blood mercury levels and the trophic ecology of Namew (lake sturgeon, Acipenser fulvescens)
      FACETS • Vol. 9 • pp. 1 - 13
      Water resource development can alter the movement and ecology of sturgeons. We studied total (THg) and methylmercury concentrations in whole blood sampled non-lethally from namew (Moose Cree L-dialect, lake sturgeon, Acipenser fulvescens), an endangered and culturally important subsistence fish. Namew were sampled from two tributaries within the Moose Cree Homeland: the Lower Mattagami River (an impacted system with four hydroelectric generating stations) and the North French River (a reference system that is free-flowing system with no development). Results indicated namew from the North French River had higher blood [THg] than those from the Mattagami River. Further modeling showed that trophic position was the primary driver of these differences, with North French namew having the highest nitrogen isotope ratios. Based on further isotope modeling, crayfish were major components of namew diet at all sites, while other prey items differed between sites. Specifically, namew with unobstructed access to the lower watershed had notably more enriched isotope values when compared to the freshwater benthic macroinvertebrates sampled, implying that other prey not captured herein may contribute to their diets and [THg]. Overall, we found differences in namew’s trophic ecology but no elevation in blood mercury levels at a site impacted by hydroelectric operations 60+ years post-impoundment.
    • OPEN ACCESS
      Note of appreciation
        FACETS • Vol. 9 • pp. i
      • OPEN ACCESS
        A pilot bioavailable strontium isotope baseline map of Southern British Columbia, Canada
        FACETS • Vol. 9 • pp. 1 - 11
        Strontium isotopes are used for provenience and mobility studies in archaeology, ecology, and forensic studies, and rely on accurate baseline maps that are used to compare and interpret human and animal strontium ratios. Here, we present a bioavailable 87Sr/86Sr map, also called an isoscape, for southern British Columbia derived from modern plant samples’ 87Sr/86Sr ratios. We sampled 67 medium root depth plants over a 900 km transect from the southern BC coast to inland BC to capture the natural 87Sr/86Sr ratios of plants along the four major geological belts in British Columbia. Non-parametric Kruskal–Wallis and pairwise Wilcox tests were used to examine whether the geological belts had statistically significant mean differences. It was found that the province could be effectively divided into east and west, with the Coastal–Intermontane and Omineca–Foreland regions having statistically different means from each other. 87Sr/86Sr ratios had statistically significant relationships with salt deposition, volcanic deposition, and mean age of the underlying lithology. Generally, 87Sr/86Sr ratios increased with distance from the coast as the atmospheric input of radiogenic strontium from marine-derived rainwater decreased and the input of radiogenic strontium isotopes from the underlying geology of the Rockies in the far east of the province increased.
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        Spatiotemporal patterns of low and highly pathogenic avian influenza virus prevalence in murres in Canada from 2007 to 2022—a case study for wildlife viral monitoring
        FACETS • Vol. 9 • pp. 1 - 13
        Migratory seabirds move across ocean basins and are one of the primary reservoirs of low pathogenic avian influenza virus (LPAIV). This includes the millions of thick-billed murres (Uria lomvia) and common murres (Uria aalge) that are distributed across northern hemisphere oceans. In response to increasingly frequent detections of highly pathogenic avian influenza virus (HPAIV) in Europe in 2020–2021, avian influenza virus (AIV) monitoring in wildlife has increased. We compiled data from murres tested for AIV in Canada between 2007 and 2022 to quantify spatiotemporal variation in the prevalence of LPAIV and HPAIV in these birds. No HPAIV was detected in murres prior to 2022, but HPAIV was present in 46% of both live/harvested and found dead murres in the northwestern Atlantic in 2022 with prevalence peaking at 63% among live birds in the summer. In the eastern Canadian Arctic, HPAIV prevalence in 2022 was <1% while LPAIV prevalence was 21%, which was significantly higher than previous sampling years. Power analyses suggest approximately 100 samples from breeding murres should be collected annually per colony or region to detect moderate changes in HPAIV prevalence. These analyses inform robust monitoring of viruses in wildlife, with implications for conservation, harvest management, and public health.
      • OPEN ACCESS
        Julie Morand-Ferron retrospective (1977–2022) for FACETS
        FACETS • Vol. 9 • pp. 1 - 4
      • OPEN ACCESS
        The effect of riffle restoration on the recovery of endangered Nooksack Dace (Rhinichthys cataractae sp. cataractae)
        FACETS • Vol. 9 • pp. 1 - 15
        The Nooksack Dace (Rhinichthys cataractae sp. cataractae) is a federally endangered riffle specialist endemic to the lower Fraser Valley of British Columbia, Canada, with historic population declines associated with riffle loss from stream dredging, channelization, and excessive sediment inputs. To assess the effectiveness of riffle restoration as a recovery strategy, gravel and cobble riffles were constructed in two replicate tributaries of the Nooksack River as a before-after-control-impact experiment, measuring dace abundance, substrate composition, and invertebrate biomass before and one year after restoration. Nooksack Dace density increased significantly in cobble (but not gravel) treatments relative to control riffles. Dace abundance was strongly associated with increased availability of interstitial refuges rather than substrate effects on invertebrate prey abundance, suggesting that interstitial space limits adult dace abundance. Young-of-the-year dace were not observed in one of the two restored streams despite riffle restoration, indicating increased dace density due to aggregation in higher-quality restored riffles. This recruitment limitation indicates persistence of a population bottleneck at an early life history stage that is not addressed by successful restoration of adult riffle habitat.
      • OPEN ACCESS
        Seasonal movement and habitat use of Bull Trout (Salvelinus confluentus) near the northern geographic range extent
        FACETS • Vol. 9 • pp. 1 - 15
        The movement ecology of Bull Trout (Salvelinus confluentus) in watersheds at the northern geographic range extent is not well understood. We implanted 54 Bull Trout with acoustic transmitters in the Prairie Creek watershed, Northwest Territories, Canada and tracked fish from July 2011 to October 2012 using 19 stationary hydrophones. Bull Trout movement patterns generally corresponded to two groups, as a result of individual variation within and across seasons. The first group exhibited seasonal variations in movement and habitat use, moving most (range 11.7–115.9 km) and occupying the largest home ranges in summer and autumn, while exhibiting little movement during winter and spring. The second group made negligible movements within seasons and resided in localized areas. Restricted movement in winter resulted in a severe range contraction. The average distance moved within a season was 11.5 km (range 0.3–64.9 km per fish). The unusually high prevalence of stationarity in this watershed suggest fish can complete all life processes (spawning, feeding, and rearing) in short reaches (<10 km) of Prairie Creek and tributaries. We encourage researchers to replicate our work in other northern watersheds to determine if the life history we describe represents a regional divergence from more southerly populations.
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        Effects of acute suspended sediment exposure on the swimming and schooling performance of imperilled Redside Dace (Clinostomus elongatus)
        FACETS • Vol. 9 • pp. 1 - 10
        Urbanization is a widespread threat to freshwater ecosystems. After rainfall, urban streams often experience unnaturally fast water flows and acute increases in suspended sediment due to the high degree of adjacent impervious land surface. Suspended sediments may negatively affect fishes by impairing respiration, and reduced water clarity may also affect social behaviours such as schooling that are dependent on visual cues. Given these two mechanisms of harm, suspended sediments may therefore exacerbate the difficulty of swimming at high water velocities. We tested this idea using imperilled Redside Dace (Clinostomus elongatus) to examine the consequences of suspended sediment on swimming performance and schooling behaviour. Using individual fish, we assayed swimming performance (standard critical swim speed test) and tail beat frequency and amplitude under a range of ecologically relevant sediment concentrations. Next, we measured the impact of sediment on the cohesion and polarization of schools. Swimming performance of individual fish was not affected by suspended sediment levels we examined. School polarization was positively correlated with water flow overall and at the fastest flows we tested; schools were more polarized when exposed to sediment. School cohesion decreased with increasing flows and was unaffected by the suspended sediment levels we examined. Our results collectively suggest that swimming performance of Redside Dace may be resilient to ecologically relevant acute suspended sediment exposure.
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        Bull kelp (Nereocystis luetkeana) growth rates as climate stress indicators for Canada’s Pacific coast
        FACETS • Vol. 9 • pp. 1 - 19
        Primary producers’ growth rates are ideal bioindicators of changing climate due to their sensitivity to environmental conditions. On the Central Coast of British Columbia, we assessed growth rates of Nereocystis luetkeana, a canopy-forming annual kelp, by assessing baseline variability in growth rates and their response to environmental conditions of over 600 individuals and across three sites (2016–2019). Optimal growth rates for blades and stipes (∼13–14 cm/day) occurred within a narrow range of local environmental conditions. Growth decreased at temperatures > 10 °C, below 1 µm/L nitrate concentration, and surface light availability reduced blade growth at low and high levels (daily light integral or DLI <20 and >40 mol/m2/day). Spatiotemporal variability in these environmental drivers co-occurred with differences in growth rates, suggesting that local conditions strongly influenced growth. In particular, temperature and nutrients were un-coupled seasonally in this region, with more variable responses in growth over the primary growing season (May to September). Overall, the sensitivity of the growth rates of this annual kelp to changing climatic conditions suggests that it is a useful bioindicator for management and marine planning efforts (e.g., restoration and aquaculture) across its species range and provides a feasible metric for monitoring.
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        Bigmouth Buffalo (Ictiobus cyprinellus) migratory behaviour and seasonal home range overlap are functions of geographic space in a fragmented riverscape
        FACETS • Vol. 9 • pp. 1 - 17
        In temperate rivers, where environmental conditions vary seasonally, many fishes migrate among summer, spawning, and winter habitats. Dams disrupt these migrations, limiting access to habitat and potentially affecting populations. Bigmouth Buffalo (Ictiobus cyprinellus) is a species of fish with at-risk populations in central Canada. The impact of dams on the extent of Bigmouth Buffalo migration and the overlap between summer and winter home ranges is unknown. Here, we assessed the migratory history of 80 Bigmouth Buffalo tagged with acoustic transmitters in the Red River (USA and Canada), a large binational waterway regulated by semi-passable dams. We sought to understand when and why Bigmouth Buffalo migrate, and how river use varies seasonally. Following more than 6 years of data collection, we found that the degree and probability of overlap between winter and summer home ranges varied by river section between barriers. Importantly, overlap was lowest in the longest continuous river section where well-defined migratory behaviours were observed. The results of this study reveal previously unknown details about Bigmouth Buffalo migration, demonstrate the consequences of river fragmentation on geographic space use, and highlight the importance of river connectivity to fish migration.
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        Marine ecozones represent a major gap in Canadian DNA barcoding efforts
        FACETS • Vol. 9 • pp. 1 - 11
        Because of Canada’s large size, it is impractical to obtain a comprehensive perspective on biotic change through morphological approaches. DNA metabarcoding offers a potential path, but its application requires access to a well-parameterized DNA barcode reference library. This study presents the current state of DNA barcode coverage for Canadian animals, highlighting progress, identifying gaps, and providing recommendations for future research. Our analysis indicates that many of the known species (100 000 terrestrial and 6000 marine) in the Canadian fauna possess DNA barcode coverage, but there are important gaps geographically and taxonomically. We summarize DNA barcode coverage for the species in freshwater, marine, and terrestrial environments by ecoregion, finding that 95.6% of the 2.3 million Canadian barcode records derive from terrestrial ecosystems. Although the density of barcode records per 100 km² is 13x higher for terrestrial than aquatic environments (22.4 vs. 1.7), coverage for 58% of marine species is available (54% for annelids, 52% for arthropods, 88% for chordates, 39% for echinoderms, and 46% for molluscs). By revealing data-deficient areas and taxonomic groups, this study offers a roadmap for expanding the DNA barcode library for the Canadian fauna as an essential foundation for the scalable biosurveillance initiatives that inform biodiversity conservation efforts.
      • OPEN ACCESS
        The changing agricultural landscape in Canada’s Mixedwood Plains Ecozone (2011–2022) and the implications for biodiversity
        FACETS • Vol. 9 • pp. 1 - 11
        The prairies and savannahs historically found in the Mixedwood Plains Ecozone have been largely converted into farmland, the dominant present-day land cover. Consequently, many species native to these grasslands have shifted to inhabiting suitable agricultural lands. More recently, agricultural intensification has led to the conversion of pastures and hay fields to annual crops, further removing habitat suitable for the persistence of grassland species. We quantified the shift from pasture and forage to annual crops as well as the dynamics among agricultural lands and other land covers in the Mixedwood Plains Ecozone, predicting biodiversity implications by providing a case study on Eastern Meadowlark (Sturnella magna (Linnaeus, 1758)). The total agricultural land area changed little over the study period, but area of pasture and forage decreased while row crop area increased. The loss of agricultural lands to urbanization was partly offset by the conversion of forests and wetlands; however, the farmland gained was of lesser agricultural quality than the farmland lost. Declines in Eastern Meadowlark abundance correlated significantly with carrying capacity loss, suggesting that habitat availability is a limiting factor for this species. We highlight the importance of land management policies to minimize the impacts of land conversion on biodiversity and agricultural production.
      • OPEN ACCESS
        Weaving ways of knowing in practice: a collaborative approach to prioritizing community knowledge and values in wildlife camera monitoring with Magnetawan First Nation
        FACETS • Vol. 9 • pp. 1 - 17
        There is not one singular way to weave together Indigenous and Western knowledges; creating meaningful cross-cultural collaborations requires a foundation of relationships rooted in the context of specific people and place. As interest in working across knowledge systems increases, our goal is to provide an example of respectful and appropriate cross-cultural collaboration within environmental practice. We demonstrate our collaborative, mixed-methods approach to developing a community-based wildlife monitoring program with Magnetawan First Nation that prioritizes community knowledge and values. Through community interviews and a youth sharing circle, participants highlighted values (respect, interconnection, reciprocity, collaboration, and relationship) as well as research priorities, providing examples of what each may look like in practice, to inform our monitoring approach. These examples, paired with reflections from the research team, are shared to explore the process of weaving together knowledge and values to co-create a community-based wildlife monitoring program, applying wildlife cameras as much more than simply a tool for data collection. This research provides tangible examples of weaving together knowledges and values in the context of environmental monitoring, helping guide future cross-cultural collaboration to ensure this work is being done in a good way.
      • OPEN ACCESS
        American lobster (Homarus americanus) hepatopancreas transcriptome reveals the significance of chitin-related genes during impoundment shell disease
        FACETS • Vol. 9 • pp. 1 - 10
        American lobsters (Homarus americanus) stored in open tidal pounds can develop impoundment shell disease (ISD), resulting in decreased marketability of the lobsters on the live market. Little is known about ISD or the immunological responses of lobsters exhibiting this disease. The objective of this project was to identify genes from H. americanus hepatopancreas that are differentially expressed in response to ISD. Lobsters were separated into asymptomatic, moderately symptomatic, and severely symptomatic groups, which represent animals with 0%, 5%–20%, and >20% lesion coverage of the carapace, respectively. RNA-seq analysis found that 134 genes were differentially expressed between groups (false discovery rate (FDR) < 0.05). Most, 80, of these genes were found exclusively in the comparison between moderately symptomatic and asymptomatic groups. All animals clustered in their proposed groups based on the expression of the differently expressed genes (DEGs), and the asymptomatic group clustered as an out-group. The expression of most DEGs was higher in the asymptomatic group than the others, which could be related to a stronger response against the disease or differences in individual resistance against ISD development. Among these genes, we highlight eight chitin-related genes, one α-2-macroglobulin-like gene, one acute phase serum amyloid A gene, one pseudohaemocyanin gene, and one trypsin-1-like gene.
      • OPEN ACCESS
        Bat handlers, bat bites, and rabies: vaccination and serological testing of humans at risk
        FACETS • Vol. 9 • pp. 1 - 11
        Globally, bats provide critical ecosystem services. Rabies, caused by rabies virus and related lyssaviruses, is one of the most significant zoonoses associated with bats. Bat biologists study bats in the laboratory and the field. To minimize the risk of disease, all bat handlers should be vaccinated against rabies and undergo routine serological testing to measure their rabies virus neutralizing antibody levels. They should use best practices to avoid exposures, such as personal protective equipment, especially gloves appropriate to the size of the bat(s) being handled. Attention to such details will prevent unnecessary exposures and avoid some of the accompanying negative perceptions that endanger bats on a global level. The small body sizes of many bats (<50 g, many <20 g) and small teeth makes their defensive bites easy to overlook. Breaks in the skin, however small, may result in exposure to lyssaviruses in the animals’ saliva. Exposure to blood-feeding bats is less common because these species are geographically restricted to the Neotropics and are the only species whose natural feeding behavior could involve transmission of rabies virus. Understanding viral transmission, preventing exposures, and responding appropriately to bites will minimize the consequences of this deadly zoonosis.
      • OPEN ACCESS
        Mismatches in salmon social–ecological systems: Challenges and opportunities for (re)alignment in the Skeena River watershed
        FACETS • Vol. 8 • pp. 1 - 30
        Mismatches between institutions and social–ecological systems (SESs) are one of the foremost challenges in natural resource management. However, while mismatches are often cited in the literature as a major challenge, empirical evidence of mismatches and their consequences is limited. This is particularly true for complex SESs, such as on the Pacific Coast of North America, where salmon drive interactions across multiple environments, jurisdictions, and scales. Here, I use the theoretical concept of fit to examine institutional alignment in a large-scale Pacific salmon SES, the Skeena River watershed in British Columbia, Canada. Utilizing Canadian federal environmental assessments as a proxy for colonial environmental governance institutions, I describe the common causes and consequences of mismatches between institutions and salmon SESs. This case study suggests that mismatches are threatening salmon sustainability and negatively affecting Indigenous People’s rights, livelihoods, and approaches to resource management and stewardship. I argue that improving social–ecological fit in salmon SESs will require new or revitalized forms of environmental governance that consciously fit the underlying social–ecological dynamics. While these findings are based on the Skeena River watershed, they may be generalizable to other salmon SESs in which mismatches between social and ecological processes and institutions exist.
      • OPEN ACCESS
        If this title is funny, will you cite me? Citation impacts of humour and other features of article titles in ecology and evolution
        FACETS • Vol. 8 • pp. 1 - 15
        Titles of scientific papers play a key role in their discovery, and “good” titles engage and recruit readers. Humour is a particularly interesting aspect of title construction, but little is known about whether funny titles boost or limit paper impact. We used a panel of scorers to assess title humour for 2439 papers in ecology and evolution, and measured associations between humour and subsequent citation (self-citation and citation by others). Papers with funnier titles were cited less, but this appears to reflect confounding with paper importance: self-citation data suggest that authors give funnier titles to papers they consider less important. After correction for this, papers with funny titles have significantly higher citation rates (P < 2.2 × 10−16; roughly doubling from lowest to highest humour score)—suggesting that humour recruits readers. We also examined associations between citation rates and other features of titles. Inclusion of acronyms and taxonomic names was associated with lower citation rates, while assertive-statement phrasing and presence of colons, question marks, and political regions were associated with somewhat higher citation rates. Title length had no effect on citation. Our results suggest that scientists can use creativity with titles without having their work condemned to obscurity.
      • OPEN ACCESS
        Saskatchewan Condition Assessment of Lotic Ecosystems (SCALE): A multivariate tool for assessing the integrity of Northern Great Plains wadeable rivers and streams
        FACETS • Vol. 8 • pp. 1 - 31
        Human access to surface water resources in the Northern Great Plains (NGP) is challenged by availability and quality, and ecosystem health objectives for these characteristics have not been well developed. Here, we present a predictive multivariate model using the reference condition approach to inform goals for ecosystem health assessment. Benthic communities and abiotic variables were collected at 280 potential reference sites and 8 test sites, and of these, reference sites with least amount of human activity (n = 83) were classified into three community groups and summary metrics. Discriminant function analysis and cross-validation determined that stream order and ecoregion predicted 68.7% of the sites correctly, thus enabling comparison of sites with unknown condition to reference site groups. We then evaluated metrics through Test Site Analysis and stressor gradient analysis in each biological group. Beetle and amphipod fauna were found to be important for condition assessment in addition to traditional metrics of species richness, abundance, detritivory, Ephemeroptera/Plecoptera/Trichoptera dominance, and assemblage composition. These results provide least disturbed reference condition and ecological insights into land use impacts in the NGP. Ultimately, this model is an effective tool for evaluating biotic condition, enables prioritizing river management strategies, and can quantify the efficacy of mitigation measures.
      • OPEN ACCESS
        Forested wetlands in a protected area and the adjacent working landscape provide complementary biodiversity value based on breeding birds: A case study from Nova Scotia, Canada
        FACETS • Vol. 8 • pp. 1 - 31
        Protected areas (PAs) are a key component of most conservation strategies because they are thought to enhance biodiversity value relative to similar habitats in working landscapes. To examine whether PAs in Nova Scotia are functioning to enhance the biodiversity value of the landscapes in which they are embedded, we surveyed breeding bird communities in forested wetlands inside and outside of a large PA during 2018 and 2019. We found significantly higher species richness and diversity at sites in the working landscape relative to those inside the PA. Bird communities from different wetland types inside the PA were distinct from each other and those outside the PA, whereas bird communities at outside sites were homogenized and comprised of more early-successional species. There were numerous species of conservation concern at both inside and outside sites, indicating that both types of sites are playing important conservation roles. Abundances of these key species were driven by a combination of local (e.g., water table depth, herb, and shrub cover) and landscape scale factors (e.g., edge density and human disturbance). The higher abundance of long-distance migrants and insectivores at inside sites suggests PAs are providing critical additional support to key guilds that are in steep decline.